Here is an alternate way to play this song, I know this version really confusing and its 
more advanced. But it sounds pretty good if you can get it down.

Also, C#m and B are in the same shape as 3-finger power chord on the A string (Second 
string) and you strum all of the strings.

These are the chords and their frets starting from the capo:
C#m:        B:
4th fret    2nd fret

Capo 6th Fret

Verse 1:
C#m (x13321@4)             E (022100@1)                       B (x2444x@1)               
    AFather (x02220@1)hear my prayer I need the perfect words, words that he will hear and
                           C#m (x13321@4)                      Eknow (022100@1)they're straight from you. I don't know what to say I only know it
B (x2444x@1)             C#m (x13321@4)         B (x2444x@1)     Ahurts (x02220@1)to see my only friend slowly fade away

Chorus:
          E (022100@1)                       B (x2444x@1)                    
C#m (x13321@4) B (x2444x@1) ASo (x02220@1)maybe this time, I'll speak the words of life with your fire in my eyes,
                E (022100@1)                   B (x2444x@1)                      Abut (x02220@1)that old familiar fear is tearin' at my words What am i so afraid of
            E (022100@1)                    B (x2444x@1)                   C#m (x13321@4)
        Bhere (x2444x@1)i go again talkin' 'bout the rain and mullin' over things that won't
        A (x02220@1)                          E (022100@1)                     Blive (x2444x@1)past today and as i dance around the truth time is not his friend this
             C#m (x13321@4)          B (x2444x@1)              A (x02220@1)              
  Emight (022100@1)be my last chance to tell him that you love him here i go again
        B (x2444x@1)        Ahere (x02220@1)I go again

Verse 2:
C#m (x13321@4)              E (022100@1)                    B (x2444x@1)                 
   ALord (x02220@1)you love him so you gave your only son if he would just believe he
            C#m (x13321@4)                  E (022100@1)                   Bwould (x2444x@1)never die how then will he know if he has never heard Lord he has
C#m (x13321@4)        B (x2444x@1)          Anever (x02220@1)seen mirrored in my life

Chorus

C#m E B A

C#m E B C#m B A

Chorus

-Thanks hope you enjoy it!